AI Agent Skills: Gated Protein Binder Design Campaign
AI Agent Skills: Gated Protein Binder Design Campaign
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AI Agent Skills: Gated Protein Binder Design Campaign
AI Agent Skills: Gated Protein Binder Design Campaign
The Gated Protein Binder Design Campaign is an AI agent skill package for managing and streamlining complex protein design tasks. It supports three key branches: de novo binder design, structure and complex prediction with calibrated confidence, and protein engineering. Each step in the process requires human verification to ensure resources are used effectively before compute is spent.
What this skill does
- Facilitates the design of binders or miniproteins by selecting epitopes or hotspots to target.
- Utilizes tools like RFdiffusion, BindCraft, BoltzGen, ProteinMPNN, ESMFold2, and Protenix for computational tasks.
- Calculates ipSAE or DockQ scores to evaluate and rank design candidates.
- Ensures disciplined deliverables and evidential support for decision-making across all steps.
Who it is for
- Developers working with AI coding agents such as Claude Code, Cursor, and Codex.
- Bioinformatics professionals focusing on protein design and structural biology.
- Teams in research institutions or biotech companies requiring structured workflows in protein engineering.
Use cases
- Designing miniprotein binders as therapeutic candidates against specified protein targets.
- Conducting high-confidence structure prediction tasks for novel protein complexes.
- Engineering proteins for improved stability or enzyme functionality in industrial applications.
Technical details
- Integrates with Binder Design, Structure Prediction, and Protein Engineering workflows.
- Leverages AI tools: RFdiffusion, BindCraft, BoltzGen, ProteinMPNN, ESMFold2, and Protenix.
- Includes comprehensive documentation in `docs/` and `NOTICE.md` for provenance and rationale tracking.
Source & Licence
This package is built on open-source work published by SPYfighting (SPYfighting/my-academic-skills) and distributed under MIT. The original licence text and copyright notice are included in your download.
Personal and commercial use, modification and redistribution are permitted, provided the original copyright and licence notice are retained.
Your purchase covers curation, licence verification, packaging, documentation and instant delivery. It does not grant exclusive rights to the underlying open-source code, which remains available under its original licence.
Delivery & Support
- Delivery: instant — a secure download link is emailed to you as soon as payment is confirmed.
- Format: ZIP archive containing the skill files, documentation and the original licence.
- Support: support@mcpcart.com — we aim to reply within 2 business days.
- Updates: updates are included only where stated on this page.
Refunds
This is a digital product delivered immediately after purchase. By completing your order you request immediate delivery and acknowledge that, once the download has been accessed, the statutory right to cancel no longer applies to the extent permitted by law. Refund requests are handled in accordance with our published Refund Policy.
Claude, Codex, Gemini and Cursor are trademarks of their respective owners. MCP Cart is an independent marketplace and is not affiliated with, endorsed by, or sponsored by any of them. Compatibility references describe interoperability only.
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